Differences

This shows you the differences between two versions of the page.

--- extra:publications_using_fast [2020/11/17 17:05] – pseudomoaner
+++ extra:publications_using_fast [2026/07/30 16:54] (current) – pseudomoaner
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 ===== Publications using FAST =====
-  - Granato, E. T, Foster, K. R, **The evolution of mass cell suicide in bacterial warfare**, Curr. Bio. (2020) //30// pp 1-8, doi: https://doi.org/10.1016/j.cub.2020.05.007
+  - Granato, E. T, Foster, K. R, **The evolution of mass cell suicide in bacterial warfare**, Curr. Bio. (2020) **30** pp 1-8, doi: https://doi.org/10.1016/j.cub.2020.05.007
-  - Meacock, O. J, Doostmohammadi, A, Foster, K. R, Yeomans, J. M, Durham, W. M, **Bacteria solve the problem of crowding by moving slowly**, ArXiv (2020) 2008.07915, http://arxiv.org/abs/2008.07915
+  - Meacock, O. J, Doostmohammadi, A, Foster, K. R, Yeomans, J. M, Durham, W. M, **Bacteria solve the problem of crowding by moving slowly**, Nat. Phys. (2021) **17** pp 205-210, doi: https://doi.org/10.1038/s41567-020-01070-6
-  - Kumar, R.K, Meiller-Legrand, T, Alcinesio, A, Gonzalez, D, Mavridou, D.A.I, Meacock, O.J, Smith, W.P.J, Zhou, L, Kim, W, Pulcu, G, Bayley, H & Foster, K.R (2020). **Droplet printing reveals the importance of micron-scale structure for bacterial ecology**, bioRxiv (2020), https://doi.org/10.1101/2020.10.20.346577
+  - Kumar, R. K, Meiller-Legrand, T, Alcinesio, A, Gonzalez, D, Mavridou, D. A. I, et al. **Droplet printing reveals the importance of micron-scale structure for bacterial ecology**, Nat. Comms. (2021) **12** 857, https://doi.org/10.1038/s41467-021-20996-w
+  - Ghosh, D, Cheng, X, **To cross or not to cross: Collective swimming of Escherichia coli under two-dimensional confinement**, Phys. Rev. Research (2022) **4** 023105, https://doi.org/10.1103/PhysRevResearch.4.023105
+  - Meacock, O. J, Durham, W. M, **Tracking bacteria at high density with FAST, the Feature-Assisted Segmenter/Tracker**, PLOS Computational Biology (2023), doi: https://doi.org/10.1371/journal.pcbi.1011524
+  - Ahmadi, A, Courtney, M, Ren, C, Ingalls, B, **A benchmarked comparison of software packages for time-lapse image processing of monolayer bacterial population dynamics**, Microbiol. Spectr. (2024) 0:e00032-24, https://doi.org/10.1128/spectrum.00032-24
+  - Booth, S. C, Meacock, O. J, Foster, K. R, **Cell motility empowers bacterial contact weapons**, ISME J. (2024) wrae141, https://doi.org/10.1093/ismejo/wrae141
+  - Buddle, J. E, Thompson, L. M, Williams, A. S, Wright, R. C. T, Durham, W. M, et al. **Identification of pathways to high-level vancomycin resistance in Clostridioides difficile that incur high fitness costs in key pathogenicity traits** PLOS Biology (2024) **22** e3002741, https://doi.org/10.1371/journal.pbio.3002741
+  - Wheeler, J. H. R, Foster, K.R, Durham, W.M. **Individual bacterial cells can use spatial sensing of chemical gradients to direct chemotaxis on surfaces**, Nat. Microbiol. (2024) **9** 2308–2322. https://doi.org/10.1038/s41564-024-01729-3
+  - Andersen, B. H, Safara, F. M. R, Grudtsyna, V, Meacock O. J, Andersen, S. G, Durham, W. M, Araujo, N. A. M, Doostmohammadi A. **Evidence of universal conformal invariance in living biological matter**, Nat. Phys. (2025) **21**, 618–623. https://doi.org/10.1038/s41567-025-02791-2