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usage:batch_processing [2020/01/22 13:20] – [Video demonstration] pseudomoaner | usage:batch_processing [2020/06/26 11:48] (current) – [Installing Double FAST] pseudomoaner | ||
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The .m files required to run Double FAST are included in the main distribution of FAST, available from the [[setup: | The .m files required to run Double FAST are included in the main distribution of FAST, available from the [[setup: | ||
- | Double | + | To run, double |
===== Using Double FAST script ===== | ===== Using Double FAST script ===== | ||
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- Set up the DoubleFAST.m script. | - Set up the DoubleFAST.m script. | ||
- | If you are not used to editing code directly, don't panic! All you need to do is tell the software where your datasets are, and what stages in the analysis you would like to perform. By leaving these stages in your hands, | + | If you are not used to editing code directly, don't panic! All you need to do is tell the software where your datasets are, and what stages in the analysis you would like to perform. By leaving these stages in your hands, |
Once you have run FAST on your initial dataset, open the DoubleFAST.m script, available within the DoubleFast directory of your FAST installation. At the top of this script are the key variables that you need to define. | Once you have run FAST on your initial dataset, open the DoubleFAST.m script, available within the DoubleFast directory of your FAST installation. At the top of this script are the key variables that you need to define. | ||
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By default, this is set up assuming a root-branch structure as shown below: | By default, this is set up assuming a root-branch structure as shown below: | ||
- | < | + | {{ :usage:batchprocessfiles.png? |
- | | RRR | | | | | | | | | |RRR{background-color:# | + | |
- | | |!| | | | | | | | | | | + | |
- | | |)|-|-| EE1 | | | | |EE1{background-color:# | + | |
- | | |!| | | |!| | | | | | | + | |
- | | |!| | | |`|-|-| IM1 |IM1{background-color:# | + | |
- | | |!| | | | | | | | | | | + | |
- | | |)|-|-| EE2 | | | | | |EE2{background-color:# | + | |
- | | |!| | | | | | | | | | | + | |
- | | |`|-|-| EE3 | | | | | |EE3{background-color:# | + | |
- | </ | + | |
However, this can be flexibly adjusted according to your requirements. The only requirement is that **batchRoots** is defined as a cell array containing the paths to all of your datasets. | However, this can be flexibly adjusted according to your requirements. The only requirement is that **batchRoots** is defined as a cell array containing the paths to all of your datasets. |